IL_4WWW_230

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WWW_230 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0699

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4WWW|1|XA|G|887
4WWW|1|XA|G|888
4WWW|1|XA|A|889
4WWW|1|XA|G|890
4WWW|1|XA|U|891
4WWW|1|XA|A|892
4WWW|1|XA|C|893
4WWW|1|XA|G|894
*
4WWW|1|XA|U|905
4WWW|1|XA|A|906
4WWW|1|XA|A|907
4WWW|1|XA|A|908
4WWW|1|XA|A|909
4WWW|1|XA|C|910

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12