IL_4WWW_237

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGC*GCC

Length

7 nucleotides

Bulged bases

4WWW|1|XA|U|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WWW_237 not in the Motif Atlas

Geometric match to IL_4E59_001

Geometric discrepancy: 0.2364

The information below is about IL_4E59_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4WWW|1|XA|G|1048
4WWW|1|XA|U|1049
4WWW|1|XA|G|1050
4WWW|1|XA|C|1051
*
4WWW|1|XA|G|1207
4WWW|1|XA|C|1208
4WWW|1|XA|C|1209

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XC

30S ribosomal protein S3

Chain XN

30S ribosomal protein S14