IL_4WWW_283

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

4WWW|1|YA|A|788, 4WWW|1|YA|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WWW_283 not in the Motif Atlas

Geometric match to IL_5J7L_265

Geometric discrepancy: 0.1562

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

4WWW|1|YA|G|775
4WWW|1|YA|G|776
4WWW|1|YA|G|777
*
4WWW|1|YA|C|787
4WWW|1|YA|A|788
4WWW|1|YA|A|789
4WWW|1|YA|U|790
4WWW|1|YA|C|791

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y2

50S ribosomal protein L34

Chain YC

50S ribosomal protein L2

Chain YS

50S ribosomal protein L22