IL_4WWW_311

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAGG*CCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CAGG,CCUG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WWW_311 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.2423

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4WWW|1|YA|C|1386
4WWW|1|YA|A|1387
4WWW|1|YA|G|1388
4WWW|1|YA|G|1389
*
4WWW|1|YA|C|1398
4WWW|1|YA|C|1399
4WWW|1|YA|U|1400
4WWW|1|YA|G|1401

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YT

50S ribosomal protein L23