IL_4WWW_336
3D structure
- PDB id
- 4WWW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to CEM-101
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 4WWW|1|YA|A|1938, 4WWW|1|YA|U|1944, 4WWW|1|YA|U|1963
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4WWW_336 not in the Motif Atlas
- Geometric match to IL_4V9F_071
- Geometric discrepancy: 0.1407
- The information below is about IL_4V9F_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
4WWW|1|YA|C|1934
4WWW|1|YA|G|1935
4WWW|1|YA|A|1936
4WWW|1|YA|A|1937
4WWW|1|YA|A|1938
4WWW|1|YA|U|1939
4WWW|1|YA|U|1940
4WWW|1|YA|C|1941
4WWW|1|YA|C|1942
4WWW|1|YA|U|1943
4WWW|1|YA|U|1944
4WWW|1|YA|G|1945
*
4WWW|1|YA|C|1961
4WWW|1|YA|C|1962
4WWW|1|YA|U|1963
4WWW|1|YA|G|1964
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain XA
- Small subunit ribosomal RNA; SSU rRNA
- Chain YC
- 50S ribosomal protein L2
Coloring options: