IL_4WWW_339

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCG*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCG,CGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WWW_339 not in the Motif Atlas

Geometric match to IL_4V9F_105

Geometric discrepancy: 0.206

The information below is about IL_4V9F_105

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4WWW|1|YA|C|2065
4WWW|1|YA|C|2066
4WWW|1|YA|G|2067
*
4WWW|1|YA|C|2443
4WWW|1|YA|G|2444
4WWW|1|YA|G|2445

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YE

50S ribosomal protein L4

Chain YL

50S ribosomal protein L15