IL_4WWW_394

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGC*GACC

Length

7 nucleotides

Bulged bases

4WWW|1|YA|A|443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WWW_394 not in the Motif Atlas

Geometric match to IL_4P3U_012

Geometric discrepancy: 0.252

The information below is about IL_4P3U_012

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

4WWW|1|YA|G|35
4WWW|1|YA|G|36
4WWW|1|YA|C|37
*
4WWW|1|YA|G|442
4WWW|1|YA|A|443
4WWW|1|YA|C|444
4WWW|1|YA|C|445

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YE

50S ribosomal protein L4

Chain YQ

50S ribosomal protein L20