IL_4WWW_402

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WWW_402 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1155

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4WWW|1|YA|U|1851
4WWW|1|YA|U|1852
4WWW|1|YA|A|1853
4WWW|1|YA|A|1854
4WWW|1|YA|U|1855
4WWW|1|YA|U|1856
4WWW|1|YA|G|1857
4WWW|1|YA|A|1858
4WWW|1|YA|U|1859
4WWW|1|YA|G|1860
*
4WWW|1|YA|U|1882
4WWW|1|YA|U|1883
4WWW|1|YA|G|1884
4WWW|1|YA|A|1885
4WWW|1|YA|U|1886
4WWW|1|YA|C|1887
4WWW|1|YA|G|1888
4WWW|1|YA|A|1889
4WWW|1|YA|A|1890
4WWW|1|YA|G|1891

Current chains

Chain YA

23S rRNA

Nearby chains