IL_4WZD_169

3D structure

PDB id

4WZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with cognate tRNA-Tyr in the P-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCUCU*AUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WZD_169 not in the Motif Atlas

Geometric match to IL_5TBW_117

Geometric discrepancy: 0.2153

The information below is about IL_5TBW_117

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_14592.1

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

4WZD|1|14|C|2680||||P_1
4WZD|1|14|C|2681||||P_1
4WZD|1|14|U|2682||||P_1
4WZD|1|14|C|2683||||P_1
4WZD|1|14|U|2684||||P_1
*
4WZD|1|14|A|2725||||P_1
4WZD|1|14|U|2726||||P_1
4WZD|1|14|G|2727||||P_1

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L14

Chain 29

50S ribosomal protein L3

Chain 55

50S ribosomal protein L17

Chain 75

50S ribosomal protein L19