IL_4WZD_391
3D structure
- PDB id
- 4WZD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with cognate tRNA-Tyr in the P-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CCUGCGUAGGAUAG*CCUGG
- Length
- 19 nucleotides
- Bulged bases
- 4WZD|1|1H|C|2111||||P_1, 4WZD|1|1H|U|2113||||P_1, 4WZD|1|1H|U|2118||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4WZD_391 not in the Motif Atlas
- Geometric match to IL_5BTM_001
- Geometric discrepancy: 0.365
- The information below is about IL_5BTM_001
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
4WZD|1|1H|C|2107||||P_1
4WZD|1|1H|C|2108||||P_1
4WZD|1|1H|U|2109||||P_1
4WZD|1|1H|G|2110||||P_1
4WZD|1|1H|C|2111||||P_1
4WZD|1|1H|G|2112||||P_1
4WZD|1|1H|U|2113||||P_1
4WZD|1|1H|A|2114||||P_1
4WZD|1|1H|G|2115||||P_1
4WZD|1|1H|G|2116||||P_1
4WZD|1|1H|A|2117||||P_1
4WZD|1|1H|U|2118||||P_1
4WZD|1|1H|A|2119||||P_1
4WZD|1|1H|G|2120||||P_1
*
4WZD|1|1H|C|2178||||P_1
4WZD|1|1H|C|2179||||P_1
4WZD|1|1H|U|2180||||P_1
4WZD|1|1H|G|2181||||P_1
4WZD|1|1H|G|2182||||P_1
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 3K
- Transfer RNA; tRNA
- Chain 71
- 50S ribosomal protein L1
Coloring options: