IL_4XEJ_007

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UGAC*GG

Length

6 nucleotides

Bulged bases

4XEJ|1|A16S|G|129|||A, 4XEJ|1|A16S|A|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_007 not in the Motif Atlas

Homologous match to IL_4LFB_007

Geometric discrepancy: 0.1642

The information below is about IL_4LFB_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_75289.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

4XEJ|1|A16S|U|129
4XEJ|1|A16S|G|129|||A
4XEJ|1|A16S|A|130
4XEJ|1|A16S|C|131
*
4XEJ|1|A16S|G|231
4XEJ|1|A16S|G|232

Current chains

Chain A16S

16S ribosomal RNA

Nearby chains

Chain AS16

30S ribosomal protein S16

Chain AS17

30S ribosomal protein S17

Chain AS20

30S ribosomal protein S20