IL_4XEJ_020
3D structure
- PDB id
- 4XEJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- IRES bound to bacterial Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- CGGCCAAC*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4XEJ_020 not in the Motif Atlas
- Homologous match to IL_4LFB_020
- Geometric discrepancy: 0.1822
- The information below is about IL_4LFB_020
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_11411.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 12
Unit IDs
4XEJ|1|A16S|C|504
4XEJ|1|A16S|G|505
4XEJ|1|A16S|G|506
4XEJ|1|A16S|C|507
4XEJ|1|A16S|C|508
4XEJ|1|A16S|A|509
4XEJ|1|A16S|A|510
4XEJ|1|A16S|C|511
*
4XEJ|1|A16S|G|540
4XEJ|1|A16S|G|541
Current chains
- Chain A16S
- 16S ribosomal RNA
Nearby chains
- Chain AS04
- 30S ribosomal protein S4
- Chain AS05
- 30S ribosomal protein S5
- Chain AS12
- 30S ribosomal protein S12
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