IL_4XEJ_043

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GG*UCAGC

Length

7 nucleotides

Bulged bases

4XEJ|1|A16S|C|1200, 4XEJ|1|A16S|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_043 not in the Motif Atlas

Homologous match to IL_4LFB_045

Geometric discrepancy: 0.1403

The information below is about IL_4LFB_045

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_24264.1

Basepair signature

cWW-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

4XEJ|1|A16S|G|1057
4XEJ|1|A16S|G|1058
*
4XEJ|1|A16S|U|1199
4XEJ|1|A16S|C|1200
4XEJ|1|A16S|A|1201
4XEJ|1|A16S|G|1202
4XEJ|1|A16S|C|1203

Current chains

Chain A16S

16S ribosomal RNA

Nearby chains

Chain AS03

30S ribosomal protein S3

Chain AS10

30S ribosomal protein S10

Chain AS14

30S ribosomal protein S14