IL_4XEJ_051

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CCAGC*GG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_051 not in the Motif Atlas

Homologous match to IL_4LFB_049

Geometric discrepancy: 0.2517

The information below is about IL_4LFB_049

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_87975.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

10

Unit IDs

4XEJ|1|A16S|C|1128
4XEJ|1|A16S|C|1129
4XEJ|1|A16S|A|1130
4XEJ|1|A16S|G|1131
4XEJ|1|A16S|C|1132
*
4XEJ|1|A16S|G|1142
4XEJ|1|A16S|G|1143

Current chains

Chain A16S

16S ribosomal RNA

Nearby chains

Chain AS09

30S ribosomal protein S9