IL_4XEJ_092

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGA*UAACC

Length

8 nucleotides

Bulged bases

4XEJ|1|A23S|G|776, 4XEJ|1|A23S|A|788, 4XEJ|1|A23S|A|789, 4XEJ|1|A23S|C|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_092 not in the Motif Atlas

Geometric match to IL_7A0S_021

Geometric discrepancy: 0.0909

The information below is about IL_7A0S_021

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_89509.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

4XEJ|1|A23S|G|775
4XEJ|1|A23S|G|776
4XEJ|1|A23S|A|777
*
4XEJ|1|A23S|U|787
4XEJ|1|A23S|A|788
4XEJ|1|A23S|A|789
4XEJ|1|A23S|C|790
4XEJ|1|A23S|C|791

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain AL02

50S ribosomal protein L2

Chain AL04

50S ribosomal protein L4

Chain AL22

50S ribosomal protein L22

Chain AL34

50S ribosomal protein L34