IL_4XEJ_112

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGC,GCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_112 not in the Motif Atlas

Homologous match to IL_4WF9_042

Geometric discrepancy: 0.1876

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

4XEJ|1|A23S|G|1036
4XEJ|1|A23S|G|1037
4XEJ|1|A23S|C|1038
*
4XEJ|1|A23S|G|1117
4XEJ|1|A23S|C|1118
4XEJ|1|A23S|C|1119

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain AL06

50S ribosomal protein L6

Chain AL16

50S ribosomal protein L16

Chain AL25

50S ribosomal protein L25