IL_4XEJ_113

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGAAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

4XEJ|1|A23S|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_113 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.1643

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

4XEJ|1|A23S|C|1043
4XEJ|1|A23S|G|1044
4XEJ|1|A23S|A|1045
4XEJ|1|A23S|A|1046
4XEJ|1|A23S|G|1047
4XEJ|1|A23S|A|1048
4XEJ|1|A23S|C|1049
4XEJ|1|A23S|A|1050
4XEJ|1|A23S|G|1051
*
4XEJ|1|A23S|U|1108
4XEJ|1|A23S|C|1109
4XEJ|1|A23S|G|1110
4XEJ|1|A23S|A|1111
4XEJ|1|A23S|G|1112

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains