IL_4XEJ_151

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UGU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_151 not in the Motif Atlas

Geometric match to IL_4KR9_002

Geometric discrepancy: 0.2633

The information below is about IL_4KR9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4XEJ|1|A23S|U|2089
4XEJ|1|A23S|G|2090
4XEJ|1|A23S|U|2091
*
4XEJ|1|A23S|G|2228
4XEJ|1|A23S|C|2229
4XEJ|1|A23S|G|2230

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain AL02

50S ribosomal protein L2

Chain AL09

50S ribosomal protein L9

Chain AL28

50S ribosomal protein L28