IL_4XEJ_169

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

4XEJ|1|A23S|G|2576, 4XEJ|1|A23S|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_169 not in the Motif Atlas

Homologous match to IL_5J7L_340

Geometric discrepancy: 0.1259

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4XEJ|1|A23S|C|2510
4XEJ|1|A23S|U|2511
4XEJ|1|A23S|C|2512
*
4XEJ|1|A23S|G|2574
4XEJ|1|A23S|C|2575
4XEJ|1|A23S|G|2576
4XEJ|1|A23S|A|2577
4XEJ|1|A23S|G|2578

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain AL03

50S ribosomal protein L3

Chain AL32

50S ribosomal protein L32