IL_4XEJ_180

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_180 not in the Motif Atlas

Homologous match to IL_7A0S_098

Geometric discrepancy: 0.1271

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4XEJ|1|A23S|G|2737
4XEJ|1|A23S|A|2738
4XEJ|1|A23S|U|2739
4XEJ|1|A23S|A|2740
4XEJ|1|A23S|A|2741
4XEJ|1|A23S|C|2742
*
4XEJ|1|A23S|G|2762
4XEJ|1|A23S|G|2763
4XEJ|1|A23S|A|2764
4XEJ|1|A23S|A|2765
4XEJ|1|A23S|G|2766
4XEJ|1|A23S|C|2767

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain AL06

50S ribosomal protein L6

Chain AL13

50S ribosomal protein L13