IL_4XEJ_184

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_184 not in the Motif Atlas

Geometric match to IL_7RQB_110

Geometric discrepancy: 0.186

The information below is about IL_7RQB_110

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_83162.5

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

4XEJ|1|A23S|U|2847
4XEJ|1|A23S|G|2848
4XEJ|1|A23S|U|2849
4XEJ|1|A23S|A|2850
4XEJ|1|A23S|A|2851
4XEJ|1|A23S|G|2852
*
4XEJ|1|A23S|U|2865
4XEJ|1|A23S|U|2866
4XEJ|1|A23S|G|2867
4XEJ|1|A23S|A|2868
4XEJ|1|A23S|G|2869

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain A16S

Small subunit ribosomal RNA; SSU rRNA

Chain AL17

50S ribosomal protein L17

Chain AL19

50S ribosomal protein L19