IL_4XEJ_203

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGACAAC*GCUAAUCC

Length

15 nucleotides

Bulged bases

4XEJ|1|B16S|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_203 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.2648

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

4XEJ|1|B16S|G|147
4XEJ|1|B16S|G|148
4XEJ|1|B16S|A|149
4XEJ|1|B16S|C|150
4XEJ|1|B16S|A|151
4XEJ|1|B16S|A|152
4XEJ|1|B16S|C|153
*
4XEJ|1|B16S|G|168
4XEJ|1|B16S|C|169
4XEJ|1|B16S|U|170
4XEJ|1|B16S|A|171
4XEJ|1|B16S|A|172
4XEJ|1|B16S|U|173
4XEJ|1|B16S|C|174
4XEJ|1|B16S|C|175

Current chains

Chain B16S

16S ribosomal RNA

Nearby chains

Chain BS20

30S ribosomal protein S20