IL_4XEJ_210

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GCAAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_210 not in the Motif Atlas

Geometric match to IL_5J7L_018

Geometric discrepancy: 0.2139

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

4XEJ|1|B16S|G|371
4XEJ|1|B16S|C|372
4XEJ|1|B16S|A|373
4XEJ|1|B16S|A|374
4XEJ|1|B16S|U|375
*
4XEJ|1|B16S|A|389
4XEJ|1|B16S|C|390

Current chains

Chain B16S

16S ribosomal RNA

Nearby chains

Chain BS16

30S ribosomal protein S16