IL_4XEJ_236

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UGCUA*UAGCA

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UGCUA,UAGCA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_236 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3152

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

4XEJ|1|B16S|U|997
4XEJ|1|B16S|G|998
4XEJ|1|B16S|C|998|||A
4XEJ|1|B16S|U|999
4XEJ|1|B16S|A|1000
*
4XEJ|1|B16S|U|1040
4XEJ|1|B16S|A|1041
4XEJ|1|B16S|G|1042
4XEJ|1|B16S|C|1043
4XEJ|1|B16S|A|1044

Current chains

Chain B16S

16S ribosomal RNA

Nearby chains