IL_4XEJ_237

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_237 not in the Motif Atlas

Geometric match to IL_4V88_406

Geometric discrepancy: 0.2336

The information below is about IL_4V88_406

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

4XEJ|1|B16S|C|1008
4XEJ|1|B16S|G|1009
4XEJ|1|B16S|G|1010
*
4XEJ|1|B16S|C|1019
4XEJ|1|B16S|U|1020
4XEJ|1|B16S|G|1021

Current chains

Chain B16S

16S ribosomal RNA

Nearby chains