IL_4XEJ_267

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_267 not in the Motif Atlas

Geometric match to IL_4KR9_002

Geometric discrepancy: 0.1696

The information below is about IL_4KR9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4XEJ|1|B23S|C|57
4XEJ|1|B23S|G|58
4XEJ|1|B23S|U|59
*
4XEJ|1|B23S|G|68
4XEJ|1|B23S|C|69
4XEJ|1|B23S|G|70

Current chains

Chain B23S

23S ribosomal RNA

Nearby chains

Chain BL23

50S ribosomal protein L23

Chain BL29

50S ribosomal protein L29

Chain BL34

50S ribosomal protein L34