IL_4XEJ_301

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGG*CUAC

Length

7 nucleotides

Bulged bases

4XEJ|1|B23S|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_301 not in the Motif Atlas

Geometric match to IL_7A0S_078

Geometric discrepancy: 0.2978

The information below is about IL_7A0S_078

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

4XEJ|1|B23S|G|880
4XEJ|1|B23S|G|881
4XEJ|1|B23S|G|882
*
4XEJ|1|B23S|C|894
4XEJ|1|B23S|U|895
4XEJ|1|B23S|A|896
4XEJ|1|B23S|C|897

Current chains

Chain B23S

23S ribosomal RNA

Nearby chains

Chain BL11

50S ribosomal protein L11

Chain BL25

50S ribosomal protein L25