IL_4XEJ_356

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GCC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCC,GGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_356 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.222

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4XEJ|1|B23S|G|2127
4XEJ|1|B23S|C|2128
4XEJ|1|B23S|C|2129
*
4XEJ|1|B23S|G|2159
4XEJ|1|B23S|G|2160
4XEJ|1|B23S|C|2161

Current chains

Chain B23S

23S ribosomal RNA

Nearby chains