IL_4XEJ_358

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CUC*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUC,GAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_358 not in the Motif Atlas

Geometric match to IL_3R1D_002

Geometric discrepancy: 0.2624

The information below is about IL_3R1D_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

39

Unit IDs

4XEJ|1|B23S|C|2261
4XEJ|1|B23S|U|2262
4XEJ|1|B23S|C|2263
*
4XEJ|1|B23S|G|2277
4XEJ|1|B23S|A|2278
4XEJ|1|B23S|G|2279

Current chains

Chain B23S

23S ribosomal RNA

Nearby chains

Chain BL16

50S ribosomal protein L16

Chain BL27

50S ribosomal protein L27