IL_4XEJ_372

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

4XEJ|1|B23S|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_372 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.1072

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

4XEJ|1|B23S|U|2636
4XEJ|1|B23S|U|2637
4XEJ|1|B23S|G|2638
4XEJ|1|B23S|A|2639
4XEJ|1|B23S|G|2640
*
4XEJ|1|B23S|C|2774
4XEJ|1|B23S|A|2775
4XEJ|1|B23S|A|2776
4XEJ|1|B23S|G|2777
4XEJ|1|B23S|A|2778
4XEJ|1|B23S|U|2779
4XEJ|1|B23S|G|2780
4XEJ|1|B23S|A|2781
4XEJ|1|B23S|G|2782

Current chains

Chain B23S

23S ribosomal RNA

Nearby chains

Chain BL03

50S ribosomal protein L3

Chain BL13

50S ribosomal protein L13