IL_4XEJ_387

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CUCAAAC*GUUGUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22310.1

Basepair signature

cWW-L-R-tSH-tHS-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

4XEJ|1|BIRE|C|6153
4XEJ|1|BIRE|U|6154
4XEJ|1|BIRE|C|6155
4XEJ|1|BIRE|A|6156
4XEJ|1|BIRE|A|6157
4XEJ|1|BIRE|A|6158
4XEJ|1|BIRE|C|6159
*
4XEJ|1|BIRE|G|6170
4XEJ|1|BIRE|U|6171
4XEJ|1|BIRE|U|6172
4XEJ|1|BIRE|G|6173
4XEJ|1|BIRE|U|6174
4XEJ|1|BIRE|G|6175

Current chains

Chain BIRE

IRES RNA

Nearby chains

Chain B16S

Small subunit ribosomal RNA; SSU rRNA

Chain B23S

Large subunit ribosomal RNA; LSU rRNA

Chain BS09

30S ribosomal protein S9

Chain BS13

30S ribosomal protein S13