IL_4XEJ_389

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGCG*CGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_389 not in the Motif Atlas

Homologous match to IL_6CZR_136

Geometric discrepancy: 0.1498

The information below is about IL_6CZR_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05564.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

14

Unit IDs

4XEJ|1|A16S|G|594
4XEJ|1|A16S|G|595
4XEJ|1|A16S|C|596
4XEJ|1|A16S|G|597
*
4XEJ|1|A16S|C|643
4XEJ|1|A16S|G|644
4XEJ|1|A16S|C|645

Current chains

Chain A16S

16S ribosomal RNA

Nearby chains

Chain AS08

30S ribosomal protein S8

Chain AS17

30S ribosomal protein S17