IL_4XEJ_418
3D structure
- PDB id
- 4XEJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- IRES bound to bacterial Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- GGAAU*GGAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4XEJ_418 not in the Motif Atlas
- Homologous match to IL_5J7L_361
- Geometric discrepancy: 0.097
- The information below is about IL_5J7L_361
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
4XEJ|1|B16S|G|673
4XEJ|1|B16S|G|674
4XEJ|1|B16S|A|675
4XEJ|1|B16S|A|676
4XEJ|1|B16S|U|677
*
4XEJ|1|B16S|G|713
4XEJ|1|B16S|G|714
4XEJ|1|B16S|A|715
4XEJ|1|B16S|A|716
4XEJ|1|B16S|C|717
Current chains
- Chain B16S
- 16S ribosomal RNA
Nearby chains
- Chain BL02
- 50S ribosomal protein L2
- Chain BS06
- 30S ribosomal protein S6
- Chain BS11
- 30S ribosomal protein S11
- Chain BS18
- 30S ribosomal protein S18
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