IL_4XEJ_426
3D structure
- PDB id
- 4XEJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- IRES bound to bacterial Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- CGGAUUGG*CCAUGAAG
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4XEJ_426 not in the Motif Atlas
- Geometric match to IL_4WF9_119
- Geometric discrepancy: 0.3142
- The information below is about IL_4WF9_119
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_00087.1
- Basepair signature
- cWW-L-R-tSH-L-cWS-R-L-R-L-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
4XEJ|1|B16S|C|1303
4XEJ|1|B16S|G|1304
4XEJ|1|B16S|G|1305
4XEJ|1|B16S|A|1306
4XEJ|1|B16S|U|1307
4XEJ|1|B16S|U|1308
4XEJ|1|B16S|G|1309
4XEJ|1|B16S|G|1310
*
4XEJ|1|B16S|C|1327
4XEJ|1|B16S|C|1328
4XEJ|1|B16S|A|1329
4XEJ|1|B16S|U|1330
4XEJ|1|B16S|G|1331
4XEJ|1|B16S|A|1332
4XEJ|1|B16S|A|1333
4XEJ|1|B16S|G|1334
Current chains
- Chain B16S
- 16S ribosomal RNA
Nearby chains
- Chain BS13
- 30S ribosomal protein S13
- Chain BS19
- 30S ribosomal protein S19
- Chain BTHX
- 30S ribosomal protein Thx
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