IL_4XEJ_430

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GCCA*UGC

Length

7 nucleotides

Bulged bases

4XEJ|1|B23S|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_430 not in the Motif Atlas

Geometric match to IL_4V9K_064

Geometric discrepancy: 0.3119

The information below is about IL_4V9K_064

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

4XEJ|1|B23S|G|993
4XEJ|1|B23S|C|994
4XEJ|1|B23S|C|995
4XEJ|1|B23S|A|996
*
4XEJ|1|B23S|U|1159
4XEJ|1|B23S|G|1160
4XEJ|1|B23S|C|1161

Current chains

Chain B23S

23S ribosomal RNA

Nearby chains

Chain BL13

50S ribosomal protein L13

Chain BL20

50S ribosomal protein L20

Chain BL21

50S ribosomal protein L21

Chain BL30

50S ribosomal protein L30