IL_4XEJ_451

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CC*GAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_451 not in the Motif Atlas

Homologous match to IL_8P9A_366

Geometric discrepancy: 0.5299

The information below is about IL_8P9A_366

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87975.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

10

Unit IDs

4XEJ|1|A5S|C|30
4XEJ|1|A5S|C|31
*
4XEJ|1|A5S|G|51
4XEJ|1|A5S|A|52
4XEJ|1|A5S|A|53
4XEJ|1|A5S|G|54

Current chains

Chain A5S

5S ribosomal RNA

Nearby chains

Chain AL05

50S ribosomal protein L5

Chain AL18

50S ribosomal protein L18