IL_4Y1M_004
3D structure
- PDB id
- 4Y1M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- An Escherichia coli yybP-ykoY Mn riboswitch in the Mn2+-free state
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AACAUUUUC*GU
- Length
- 11 nucleotides
- Bulged bases
- 4Y1M|1|A|A|47, 4Y1M|1|A|U|48, 4Y1M|1|A|U|49, 4Y1M|1|A|U|50, 4Y1M|1|A|U|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4Y1M_004 not in the Motif Atlas
- Geometric match to IL_1R3E_001
- Geometric discrepancy: 0.2279
- The information below is about IL_1R3E_001
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_44609.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 28
Unit IDs
4Y1M|1|A|A|44
4Y1M|1|A|A|45
4Y1M|1|A|C|46
4Y1M|1|A|A|47
4Y1M|1|A|U|48
4Y1M|1|A|U|49
4Y1M|1|A|U|50
4Y1M|1|A|U|51
4Y1M|1|A|C|52
*
4Y1M|1|A|G|63
4Y1M|1|A|U|64
Current chains
- Chain A
- E. coli yybP-ykoY riboswitch
Nearby chains
No other chains within 10ÅColoring options: