IL_4Y4O_138
3D structure
- PDB id
- 4Y4O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 4Y4O|1|1a|A|532, 4Y4O|1|1a|U|534
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4Y4O_138 not in the Motif Atlas
- Homologous match to IL_4LFB_021
- Geometric discrepancy: 0.1034
- The information below is about IL_4LFB_021
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.4
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
4Y4O|1|1a|G|515
4Y4O|1|1a|PSU|516
4Y4O|1|1a|G|517
4Y4O|1|1a|C|518
4Y4O|1|1a|C|519
4Y4O|1|1a|A|520
4Y4O|1|1a|G|521
*
4Y4O|1|1a|C|528
4Y4O|1|1a|G|529
4Y4O|1|1a|G|530
4Y4O|1|1a|U|531
4Y4O|1|1a|A|532
4Y4O|1|1a|A|533
4Y4O|1|1a|U|534
4Y4O|1|1a|A|535
4Y4O|1|1a|C|536
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1c
- 30S ribosomal protein S3
- Chain 1d
- 30S ribosomal protein S4
- Chain 1l
- 30S ribosomal protein S12
- Chain 1y
- Ribosome-associated inhibitor A
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