IL_4Y4O_139
3D structure
- PDB id
- 4Y4O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- CGUAAAG*CG
- Length
- 9 nucleotides
- Bulged bases (A, C, G, U)
- 572A
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4Y4O_139 not in the Motif Atlas
- Homologous match to IL_4LFB_022
- Geometric discrepancy: 0.0601
- The information below is about IL_4LFB_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38186.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
4Y4O|1|1a|C|569
4Y4O|1|1a|G|570
4Y4O|1|1a|U|571
4Y4O|1|1a|A|572
4Y4O|1|1a|A|573
4Y4O|1|1a|A|574
4Y4O|1|1a|G|575
*
4Y4O|1|1a|C|880
4Y4O|1|1a|G|881
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1e
- 30S ribosomal protein S5
- Chain 1h
- 30S ribosomal protein S8
- Chain 1l
- 30S ribosomal protein S12
- Chain 1q
- 30S ribosomal protein S17
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