IL_4Y4O_169

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CAC*GG

Length

5 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Y4O_169 not in the Motif Atlas

Geometric match to IL_4LFB_054

Geometric discrepancy: 0.1032

The information below is about IL_4LFB_054

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_80097.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

4Y4O|1|1a|C|1260
4Y4O|1|1a|A|1261
4Y4O|1|1a|C|1262
*
4Y4O|1|1a|G|1273
4Y4O|1|1a|G|1274

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1u

30S ribosomal protein Thx