IL_4Y4O_231

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

4Y4O|1|2A|U|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_53523.4

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

18

Unit IDs

4Y4O|1|2A|C|1417
4Y4O|1|2A|G|1418
4Y4O|1|2A|A|1419
4Y4O|1|2A|U|1420
4Y4O|1|2A|G|1421
*
4Y4O|1|2A|C|1577
4Y4O|1|2A|U|1578
4Y4O|1|2A|A|1579
4Y4O|1|2A|A|1580
4Y4O|1|2A|G|1581

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains