Motif IL_53523.4 Version IL_53523.4 of this group appears in releases 3.48 to 3.53

Download

Csv

Json

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5	break		6		7		8		9	1-9	2-8	3-7	4-7	5-6
1	IL_5TBW_118	5TBW	0.5408	2	UAA/GAN related	1	LSU rRNA	C	3084	G	3085	A	3086	A	3087	G	3088	*	U	3054	U	3055	U	3057	G	3059	cWW	ntSW			cWW
2	IL_4V9F_094	4V9F	0.4086	1	UAA/GAN variation	0	LSU rRNA	G	2754	G	2755	U	2756	A	2757	G	2758	*	U	2724	G	2725	A	2727	C	2728	cWW			tHS	cWW
3	IL_4Y4O_236	4Y4O	0.5685	0	UAA/GAN	2A	LSU rRNA	A	1469	G	1470	A	1471	A	1472	G	1473	*	U	1518	G	1519	G	1520	U	1523	cWW			tHS	cWW
4	IL_4WF9_075	4WF9	0.5542	0	UAA/GAN variation	X	LSU rRNA	C	1901	G	1902	A	1903	A	1904	G	1905	*	U	1891	U	1892	A	1893	G	1894	cWW	ntSH	ntHW		cWW
5	IL_5TBW_023	5TBW	0.4487	0	UAA/GAN variation	1	LSU rRNA	U	741	G	742	C	743	A	744	C	745	*	G	725	G	726	G	727	G	728	cWW	ntSH		tHS	cWW
6	IL_5TBW_120	5TBW	0.2130	1	UAA/GAN	1	LSU rRNA	A	3103	U	3104	U	3105	A	3106	U	3107	*	A	3127	G	3128	A	3129	U	3131	cWW	tWH		tHS	cWW
7	IL_4V9F_037	4V9F	0.1040	1	UAA/GAN	0	LSU rRNA	U	1095	U	1096	A	1097	A	1098	G	1099	*	C	1257	G	1258	A	1259	A	1261	cWW	tWH		tHS	cWW
8	IL_4Y4O_213	4Y4O	0.1082	1	UAA/GAN	2A	LSU rRNA	C	998	U	999	A	1000	A	1001	G	1002	*	C	1153	G	1154	A	1155	G	1157	cWW	tWH		tHS	cWW
9	IL_4WF9_036	4WF9	0.0918	1	UAA/GAN	X	LSU rRNA	C	1042	U	1043	A	1044	A	1045	G	1046	*	C	1197	G	1198	A	1199	G	1201	cWW	tWH		tHS	cWW
10	IL_5J7L_277	5J7L	0.0799	1	UAA/GAN	DA	LSU rRNA	C	998	U	999	A	1000	A	1001	G	1002	*	C	1153	G	1154	A	1155	G	1157	cWW	tWH		tHS	cWW
11	IL_7A0S_033	7A0S	0.0000	1	UAA/GAN	X	LSU rRNA	C	1009	U	1010	A	1011	A	1012	G	1013	*	C	1164	G	1165	A	1166	G	1168	cWW	tWH		tHS	cWW
12	IL_5J7L_295	5J7L	0.1492	1	UAA/GAN	DA	LSU rRNA	C	1577	U	1578	A	1579	A	1580	G	1581	*	C	1417	G	1418	A	1419	G	1421	cWW	tWH		tHS	cWW
13	IL_4Y4O_231	4Y4O	0.1889	1	UAA/GAN	2A	LSU rRNA	C	1577	U	1578	A	1579	A	1580	G	1581	*	C	1417	G	1418	A	1419	G	1421	cWW	tWH		tHS	cWW
14	IL_4Y4O_228	4Y4O	0.1778	1	UAA/GAN	2A	LSU rRNA	C	1351	U	1352	A	1353	A	1354	G	1355	*	C	1376	G	1377	A	1378	G	1380	cWW	tWH		tHS	cWW
15	IL_4V9F_052	4V9F	0.2402	3	UAA/GAN	0	LSU rRNA	C	1456	U	1457	A	1458	A	1459	G	1460	*	C	1483	G	1484	A	1485	G	1489	cWW	tWH		tHS	cWW
16	IL_5TBW_063	5TBW	0.2650	2	UAA/GAN	1	LSU rRNA	C	1532	U	1533	A	1534	A	1535	G	1536	*	C	1585	G	1586	A	1587	G	1590	cWW	tWH		tHS	cWW
17	IL_5TBW_048	5TBW	0.2303	1	UAA/GAN	1	LSU rRNA	U	1167	U	1168	A	1169	A	1170	G	1171	*	C	1328	U	1329	A	1330	A	1332	cWW	tWH	ntHW		cWW
18	IL_7A0S_051	7A0S	0.5499	1	UAA/GAN	X	LSU rRNA	C	1593	U	1594	A	1595	A	1596	A	1597	*	U	1431	G	1432	A	1433	G	1435		ntWH			cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUAAG*CGAAG	6
CGAAG*UUUUUG	1
GGUAG*UGUAC	1
AGAAG*UGGU	1
CGAAG*UUAG	1
UGCAC*GGGG	1
AUUAU*AGAAU	1
UUAAG*CGAGA	1
CUAAG*CGAUG	1
CUAAG*CGAAAUG	1
CUAAG*CGAAAG	1
UUAAG*CUAUA	1
CUAAA*UGAUG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UAA*GAA	6
UAA*GAU	2
GAA*UUUU	1
GUA*GUA	1
GAA*GG	1
GAA*UA	1
GCA*GG	1
UUA*GAA	1
UAA*GAG	1
UAA*GAAAU	1
UAA*GAAA	1
UAA*UAU	1

Release history

Release	3.48	3.49	3.50	3.51	3.52	3.53
Date	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: UAA/GAN (14)
UAA/GAN variation (3)
UAA/GAN related (1)
Basepair signature: cWW-tWH-L-tHS-cWW
Heat map statistics: Min 0.06 | Avg 0.37 | Max 0.77

Help

Coloring options: Nucleotide numbers

Copyright 2026 BGSU RNA group. Page generated in 0.3149 s