IL_4Y4O_259

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases (A, C, G, U)

2116G, 2117A

QA status

Missing nucleotides: 2110, 2111, 2112, 2113, 2114, 2115, 2116, 2117, 2118, 2119, 2120, 2178, 2179

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Y4O_259 not in the Motif Atlas

Geometric match to IL_1MZP_002

Geometric discrepancy: 0.3451

The information below is about IL_1MZP_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_45944.3

Basepair signature

cWW-L-cWW-L-tWH-L-R-L

Number of instances in this motif group

5

Unit IDs

4Y4O|1|2A|G|2110
4Y4O|1|2A|C|2111
4Y4O|1|2A|G|2112
4Y4O|1|2A|U|2113
4Y4O|1|2A|A|2114
4Y4O|1|2A|G|2115
4Y4O|1|2A|G|2116
4Y4O|1|2A|A|2117
4Y4O|1|2A|U|2118
4Y4O|1|2A|A|2119
4Y4O|1|2A|G|2120
*
4Y4O|1|2A|C|2178
4Y4O|1|2A|C|2179

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains