IL_4Y4O_260

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Y4O_260 not in the Motif Atlas

Homologous match to IL_7RQB_086

Geometric discrepancy: 0.215

The information below is about IL_7RQB_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4Y4O|1|2A|G|2124
4Y4O|1|2A|G|2125
4Y4O|1|2A|A|2126
4Y4O|1|2A|G|2127
*
4Y4O|1|2A|C|2161
4Y4O|1|2A|G|2162
4Y4O|1|2A|C|2163
4Y4O|1|2A|C|2164
4Y4O|1|2A|G|2165
4Y4O|1|2A|G|2166
4Y4O|1|2A|U|2167
4Y4O|1|2A|G|2168
4Y4O|1|2A|A|2169
4Y4O|1|2A|A|2170
4Y4O|1|2A|A|2171
4Y4O|1|2A|U|2172
4Y4O|1|2A|A|2173
4Y4O|1|2A|C|2174

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains