IL_4Y4O_280

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

4Y4O|1|2A|U|2689, 4Y4O|1|2A|C|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08296.2

Basepair signature

cWW-tSH-R-R-cWW

Number of instances in this motif group

4

Unit IDs

4Y4O|1|2A|U|2687
4Y4O|1|2A|U|2688
4Y4O|1|2A|U|2689
4Y4O|1|2A|C|2690
4Y4O|1|2A|C|2691
*
4Y4O|1|2A|G|2718
4Y4O|1|2A|G|2719
4Y4O|1|2A|U|2720
4Y4O|1|2A|A|2721
4Y4O|1|2A|G|2722

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2R

50S ribosomal protein L17

Chain 2T

50S ribosomal protein L19