Motif IL_08296.2 Version IL_08296.2 of this group appears in releases 3.48 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-4 | 5-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7A0S_096 | 7A0S | 0.1778 | 2 | UAA/GAN related, with intercalation | X | LSU rRNA | U | 2666 | C | 2667 | C | 2670 | * | G | 2698 | G | 2699 | U | 2700 | A | 2701 | G | 2702 | cWW | ntSH | cWW | ncSH |
| 2 | IL_5J7L_348 | 5J7L | 0.0913 | 2 | UAA/GAN related, with intercalation | DA | LSU rRNA | U | 2687 | G | 2688 | C | 2691 | * | G | 2718 | G | 2719 | U | 2720 | A | 2721 | G | 2722 | cWW | tSH | cWW | |
| 3 | IL_4WF9_102 | 4WF9 | 0.0000 | 2 | UAA/GAN related, with intercalation | X | LSU rRNA | U | 2714 | G | 2715 | C | 2718 | * | G | 2745 | G | 2746 | U | 2747 | A | 2748 | G | 2749 | cWW | tSH | cWW | |
| 4 | IL_4Y4O_280 | 4Y4O | 0.1247 | 2 | 2A | LSU rRNA | U | 2687 | U | 2688 | C | 2691 | * | G | 2718 | G | 2719 | U | 2720 | A | 2721 | G | 2722 | cWW | tSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCUCC*GGUAG | 1 |
| UGUUC*GGUAG | 1 |
| UGUAC*GGUAG | 1 |
| UUUCC*GGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUC*GUA | 1 |
| GUU*GUA | 1 |
| GUA*GUA | 1 |
| UUC*GUA | 1 |
- Annotations
-
- UAA/GAN related, with intercalation (3)
- (1)
- Basepair signature
- cWW-tSH-R-R-cWW
- Heat map statistics
- Min 0.09 | Avg 0.12 | Max 0.22
Coloring options: