Motif IL_08296.2 Version IL_08296.2 of this group appears in releases 3.48 to 3.53

Download

Csv

Json

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3	break		4		5		6		7		8	1-8	2-7	3-4	5-6
1	IL_7A0S_096	7A0S	0.1778	2	X	LSU rRNA	U	2666	C	2667	C	2670	*	G	2698	G	2699	U	2700	A	2701	G	2702	cWW	ntSH	cWW	ncSH
2	IL_5J7L_348	5J7L	0.0913	2	DA	LSU rRNA	U	2687	G	2688	C	2691	*	G	2718	G	2719	U	2720	A	2721	G	2722	cWW	tSH	cWW
3	IL_4WF9_102	4WF9	0.0000	2	X	LSU rRNA	U	2714	G	2715	C	2718	*	G	2745	G	2746	U	2747	A	2748	G	2749	cWW	tSH	cWW
4	IL_4Y4O_280	4Y4O	0.1247	2	2A	LSU rRNA	U	2687	U	2688	C	2691	*	G	2718	G	2719	U	2720	A	2721	G	2722	cWW	tSH	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UCUCC*GGUAG	1
UGUUC*GGUAG	1
UGUAC*GGUAG	1
UUUCC*GGUAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
CUC*GUA	1
GUU*GUA	1
GUA*GUA	1
UUC*GUA	1

Release history

Release	3.48	3.49	3.50	3.51	3.52	3.53
Date	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (4)
Basepair signature: cWW-tSH-R-R-cWW
Heat map statistics: Min 0.09 | Avg 0.12 | Max 0.22

Help

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/package.js

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/corejmol.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__845060146100959__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__845060146100959__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://rna.bgsu.edu/rna3dhub/motif/view/IL_08296.2","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__845060146100959__","codePath":"https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"845060146100959","bgcolor":"white" }

setting document base to "https://rna.bgsu.edu/rna3dhub/motif/view/IL_08296.2"

Jmol Version: 14.4.4_2016.04.25 2016-04-26 17:41

java.vendor: Java2Script (HTML5)

java.version: 2016-04-21 14:47:41 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/corescript.z.js

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__845060146100959__ ready

script 1 started

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/coretext.z.js

Script completed

Jmol script terminated

script 2 started