IL_4Y4O_335

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GG*UCAGC

Length

7 nucleotides

Bulged bases (A, C, G, U)

1200C, 1201A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Y4O_335 not in the Motif Atlas

Homologous match to IL_4LFB_045

Geometric discrepancy: 0.1069

The information below is about IL_4LFB_045

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_80097.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

4Y4O|1|2a|G|1057
4Y4O|1|2a|G|1058
*
4Y4O|1|2a|U|1199
4Y4O|1|2a|C|1200
4Y4O|1|2a|A|1201
4Y4O|1|2a|G|1202
4Y4O|1|2a|C|1203

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2c

30S ribosomal protein S3

Chain 2j

30S ribosomal protein S10

Chain 2n

30S ribosomal protein S14 type Z

Chain 2y

Ribosome-associated inhibitor A