IL_4Y4O_354

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GUUGG*CCAUC

Length

10 nucleotides

Bulged bases

4Y4O|1|1A|U|1107, 4Y4O|1|1A|C|1122

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Y4O_354 not in the Motif Atlas

Homologous match to IL_9DFE_042

Geometric discrepancy: 0.2099

The information below is about IL_9DFE_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4Y4O|1|1A|G|1105
4Y4O|1|1A|U|1106
4Y4O|1|1A|U|1107
4Y4O|1|1A|G|1108
4Y4O|1|1A|G|1109
*
4Y4O|1|1A|C|1121
4Y4O|1|1A|C|1122
4Y4O|1|1A|A|1123
4Y4O|1|1A|U|1124
4Y4O|1|1A|C|1125

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1Q

50S ribosomal protein L16

Chain 1Z

50S ribosomal protein L25