IL_4Y4O_364

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

4Y4O|1|2A|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Y4O_364 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.0623

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4Y4O|1|2A|C|844
4Y4O|1|2A|G|845
4Y4O|1|2A|C|846
4Y4O|1|2A|U|847
4Y4O|1|2A|G|848
4Y4O|1|2A|A|849
4Y4O|1|2A|C|850
*
4Y4O|1|2A|G|927
4Y4O|1|2A|G|928
4Y4O|1|2A|U|930
4Y4O|1|2A|G|931
4Y4O|1|2A|G|932
4Y4O|1|2A|A|933
4Y4O|1|2A|G|934

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 1P

50S ribosomal protein L15

Chain 23

50S ribosomal protein L30