IL_4YAZ_004

3D structure

PDB id

4YAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

3',3'-cGAMP riboswitch bound with 3',3'-cGAMP

Experimental method

X-RAY DIFFRACTION

Resolution

2 Å

Loop

Sequence

GG*CAGC

Length

6 nucleotides

Bulged bases

4YAZ|1|A|A|65, 4YAZ|1|A|G|66

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YAZ_004 not in the Motif Atlas

Homologous match to IL_4YAZ_008

Geometric discrepancy: 0.1023

The information below is about IL_4YAZ_008

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.1

Basepair signature

cWW-cWW

Number of instances in this motif group

27

Unit IDs

4YAZ|1|A|G|51
4YAZ|1|A|G|52
*
4YAZ|1|A|C|64
4YAZ|1|A|A|65
4YAZ|1|A|G|66
4YAZ|1|A|C|67

Current chains

Chain A

RNA (84-MER)

Nearby chains

Chain R

Cyclic di-GMP-I riboswitch